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nextstrain / auspice.us

http://auspice.us
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tree with 36,000 tips doesn't load #74

Closed DAVILIA closed 9 months ago

DAVILIA commented 9 months ago

I have performed a json analysis with omicron and my entire tree is correct, I have managed to obtain results from all the variants on its Peru website. With Omicron, I don't know if because there are too many genomes 36,360 the page does not load and an error appears. Please can you help me.

jameshadfield commented 9 months ago

Auspice isn't designed to handle such large trees, in our experience 5,000 tips is a good number to aim for. This is partly why we subsample the SC2 analyses on nextstrain.org. I suggest you try taxonium for trees this size.