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nextstrain / avian-flu

Nextstrain build for avian influenza viruses
http://nextstrain.org/avian-flu
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Include traits and update metadata, include strains and Auspice config for genome workflow #30

Closed trvrb closed 1 month ago

trvrb commented 1 month ago

With PR #22 merged there is a single metadata TSV under data/ that can be used in the genome workflow rather than relying on the HA metadata. This PR changes metadata file name correspondingly. It also updates the genome include list to match new GISAID strain names, updates Auspice config to reflect current data sourcing and includes a division-level traits analysis.

The results of running this PR are visible at https://nextstrain.org/staging/avian-flu/update-genome-metadata/h5n1-cattle-outbreak/genome.

trvrb commented 1 month ago

Thanks James! I've just pushed this version live to https://nextstrain.org/avian-flu/h5n1-cattle-outbreak/genome.