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nextstrain / avian-flu

Nextstrain build for avian influenza viruses
http://nextstrain.org/avian-flu
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Ingest extra sources #35

Closed jameshadfield closed 3 months ago

jameshadfield commented 4 months ago

See commit messages for more. This PR was used to update the live cattle-flu genome build.

I'm not thrilled with the complexity added here, and we're scheduled to discuss this tomorrow (internally) so let's wait until after that to merge.

trvrb commented 3 months ago

With addition of NCBI ingest in PR #40, we now grab this milk sequence directly from GenBank. We can close this PR unmerged. Thank you so much @jameshadfield for the putting in the speedy work on this when it was needed.