The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
Mirrors the existing behaviour of nextstrain shell, introduced by "shell: Add support for the managed Conda runtime" (6e2d73d). It was an oversight to not do the same for nextstrain build at the same time.
Two other smaller changes too; see their commit messages.
Mirrors the existing behaviour of
nextstrain shell, introduced by "shell: Add support for the managed Conda runtime" (6e2d73d). It was an oversight to not do the same fornextstrain buildat the same time.Two other smaller changes too; see their commit messages.
Related issue(s)
Checklist