The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.
Otherwise, for remote origins other than the default of nextstrain.org, the error messages suggest incorrect/misleading possible solutions in the form of commands to run.
Otherwise, for remote origins other than the default of nextstrain.org, the error messages suggest incorrect/misleading possible solutions in the form of commands to run.
Motivated by @jameshadfield's comments in Slack.¹
¹ https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1723760025178909?thread_ts=1723701856.612259&cid=C01LCTT7JNN
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