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nextstrain / conda-base

Conda package build for nextstrain-base
https://anaconda.org/Nextstrain/nextstrain-base
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Different Augur versions between osx-64 and linux-64 subdirs #39

Closed victorlin closed 1 month ago

victorlin commented 11 months ago

Today, I observed the conda-base equivalent of https://github.com/nextstrain/docker-base/issues/128. In the build for 20230731T202813Z, augur was bumped to 22.2.0 for osx-64 but not linux-64. Only on the subsequent build for 20230731T212806Z did augur get bumped to 22.2.0 for linux-64.

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victorlin commented 11 months ago

I'm not sure why this is happened, but it was a bit hard to tell this was the case. I first noticed this when a monkeypox CI run which relied on augur=22.2.0 failed with 20230731T202813Z. When I debugged on my Macbook using the same build, it pulled augur=22.2.0. Without realizing I was using a different subdir build, this was confusing. Only after looking into how the Conda runtime's environment is built did I realize what was going on.

tsibley commented 11 months ago

Interesting. The augur Conda package is noarch, so the Bioconda channel index shouldn't have different versions between osx-64 and linux-64. The 22.2.0 package was uploaded at 2023-07-31 20:08:01.949000+00:00. So I guess our builds maybe fell on either side of the index update that included the new version?

victorlin commented 11 months ago

I triggered the builds shortly after seeing that Bioconda was updated, so that's very possible. Maybe we just have to wait a bit longer, to reflect what's built into the automatically triggered docker-base rebuild.

victorlin commented 1 month ago

No mentions of this since it was reported 9 months ago. We haven't taken any action so it's still possible, but I'm closing for now.