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nextstrain / conda-base

Conda package build for nextstrain-base
https://anaconda.org/Nextstrain/nextstrain-base
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Add evofr package for forecasting work #4

Closed tsibley closed 1 year ago

tsibley commented 1 year ago

Related-to: https://github.com/nextstrain/docker-base/pull/104

Testing

This will fail CI until https://github.com/bioconda/bioconda-recipes/pull/37854 is merged (or an evofr Conda package is otherwise available).

However, I tested this branch locally by downloading and resolving using the artifacts from that PR. After download and extraction, I temporarily modified this repo's .condarc for testing:

diff --git a/.condarc b/.condarc
index ca52847..186994a 100644
--- a/.condarc
+++ b/.condarc
@@ -1,4 +1,5 @@
 channels:
   - conda-forge
   - bioconda
+  - file:///home/tom/Downloads/LinuxArtifacts/packages/
 channel_priority: strict

and then ran ./devel/build.

tsibley commented 1 year ago

CI is now passing with release of the evofr Conda package (https://github.com/bioconda/bioconda-recipes/pull/37854). I further tested this PR update with

NEXTSTRAIN_CONDA_CHANNEL=nextstrain/label/pull-4 nextstrain update conda

and it worked like a charm.

Going to merge, which will release a new nextstrain-base version.