Closed j23414 closed 11 months ago
Thanks @jameshadfield for the review!
the "strain" column in the Dengue metadata needs improvement
Thanks for the context on how strain names affect Auspice, along with the console messages! Completely agree, yes, I'm hoping to discuss and address the "strain" column transformations in future PRs.
After a quick check-in with @joverlee521, I'm going to merge this for the time being. I'll plan for subsequent issues and PRs to better address outstanding discussion points.
Description of proposed changes
The main purpose of this commit is to ID records by "accession" to directly match changes in https://github.com/nextstrain/monkeypox/commit/927ad6cdf0f7e96384ab8a53f87aee7b5c4e658b
Additionally, the uncompressed sequence and metadata files are moved to the
data
folder instead of theresults
folder to align with the monkeypox and zika pipelines.Related issue(s)
Checklist