A tiny change: use a phylogenetic directory

nextstrain / dengue

Nextstrain build for dengue virus

https://nextstrain.org/dengue

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Closed j23414 closed 8 months ago

j23414 commented 9 months ago

A tiny change ;) Use a phylogenetic directory to follow the pathogen-repo-template.

git clone https://github.com/nextstrain/dengue.git
cd dengue
git checkout phylogenetic_dir
cd phylogenetic
nextstrain build .

j23414 commented 8 months ago

Hi @joverlee521! This PR is ready for review. Following our earlier discussion, I've implemented further changes, but am open to further revisions.

Use decompressed example files
Refactor and relocate certain dengue-specific functions from the phylogenetic/Snakefile to a more generalized dengue_config.yaml