Closed j23414 closed 3 months ago
For posterity, the workflow changes are on the phylogenetic_dir_E branch.
Explore adding {gene}_coverage
metadata columns for any gene/locus of interest using Nextclade, taking inspiration from the following RSV script:
I'm that annoying user. Thank you so much for the E tree, it's been super helpful.
Instead of documenting progress in individual PRs, e.g.
Posting the latest plan for the E gene workflow pipeline (so far) here:
Closed as completed since the following PRs are merged:
Context
By user request:
Description
Examples
Possible steps to a solution
_E
and_genome
(e.g.dengue_denv1_genome.json
anddengue_denv1_E.json
and updating the nextstrain.org manifest file.Dependencies