Closed j23414 closed 5 months ago
Part of updating the pathogen repos to match a golden path:
https://github.com/nextstrain/pathogen-repo-guide
ingest/workflow/snakemake_rules
ingest/rules
ingest/rules/*.smk
ingest/source-data/*
ingest/config
CHANGELOG.md
ingest/build-configs
Planned to postpone the harmonization process until the subsequent pull requests were integrated to prevent any merge conflicts.
Context
Part of updating the pathogen repos to match a golden path:
https://github.com/nextstrain/pathogen-repo-guide
To Dos
ingest/workflow/snakemake_rules
toingest/rules
ingest/rules/*.smk
to match pathogen-repo-guide/rules/*ingest/source-data/*
files toingest/config
CHANGELOG.md
fileingest/build-configs