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nextstrain / dengue

Nextstrain build for dengue virus
https://nextstrain.org/dengue
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Add manual serotype annotations along with justifications to "annotations.tsv" #33

Closed j23414 closed 5 months ago

j23414 commented 6 months ago

Context

In response to comment: https://github.com/nextstrain/dengue/issues/28#issuecomment-1974087722

Description

We are relying on ncbi_tax_id to split dengue records into "DENV1" - "DENV4" but some records are missing this information.

Examples

Possible solution

Incorporate any manual annotation into the "annotations.tsv" file in the form of:

DI401607    ncbi_serotype   denv1 # Based on DEFINITION line in GenBank
j23414 commented 5 months ago

Closed with merged PR https://github.com/nextstrain/dengue/pull/39

Of course feel free to flag other mis-serotyped records