nextstrain / dengue

Nextstrain build for dengue virus
https://nextstrain.org/dengue
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drop unalignable example sequences #66

Closed j23414 closed 1 month ago

j23414 commented 1 month ago

Description of proposed changes

In response to threads here and here, drop the unknown >GenBank_? example sequences.

smof grep -v "?" sequences.fasta > temp.fasta
mv temp.fasta sequences.fasta
# check headers
grep ">" sequences.fasta | less

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j23414 commented 1 month ago

merging as this change is already reflected in the dengue/all dataset