ingest: use new augur curate commands - Githubissues

nextstrain / dengue

Nextstrain build for dengue virus

https://nextstrain.org/dengue

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ingest: use new augur curate commands #74

Closed joverlee521 closed 2 months ago

joverlee521 commented 3 months ago

Follow up to https://github.com/nextstrain/ingest/issues/43, https://github.com/nextstrain/ingest/issues/44, and blocked on new Augur release.

TODOs

[x] update curate rule to use new augur curate commands
[x] update ingest/vendored to remove cruft