nextstrain / fauna

RethinkDB database to support real-time virus analysis
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Sort out why Texas/50 is being dropped #48

Open trvrb opened 7 years ago

trvrb commented 7 years ago

Some documents are getting dropped in the new upload. The original tdb has:

A/Stockholm/65/2015    A/Georgia/532/2015    F33/15    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/HongKong/146/2013    F10/15    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/HongKong/4801/2014    F12/15    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/HongKong/4801/2014    F43/15    NIMR_Feb2016_9_06.csv    320
A/Stockholm/65/2015    A/HongKong/5738/2014    F30/14    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/Netherlands/525/2014    F23/15    NIMR_Feb2016_9_06.csv    80
A/Stockholm/65/2015    A/Samara/73/2013    F35/15    NIMR_Feb2016_9_06.csv    80
A/Stockholm/65/2015    A/Stockholm/6/2014    F14/14    NIMR_Feb2016_9_06.csv    640
A/Stockholm/65/2015    A/Stockholm/6/2014    F20/14    NIMR_Feb2016_9_06.csv    320
A/Stockholm/65/2015    A/Switzerland/9715293/2013    F18/151    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/Switzerland/9715293/2013    F32/14    NIMR_Feb2016_9_06.csv    160
A/Stockholm/65/2015    A/Texas/50/2012    F36/12    NIMR_Feb2016_9_06.csv    160

while test_tdb_2 has:

A/Stockholm/65/2015    A/Georgia/532/2015    F33/15    NIMR_Feb2016_9_06.csv    160    
A/Stockholm/65/2015    A/HongKong/146/2013    F10/15    NIMR_Feb2016_9_06.csv    160    
A/Stockholm/65/2015    A/HongKong/4801/2014    F12/15    NIMR_Feb2016_9_06.csv    160    
A/Stockholm/65/2015    A/HongKong/4801/2014    F43/15    NIMR_Feb2016_9_06.csv    320    
A/Stockholm/65/2015    A/HongKong/5738/2014    F30/14    NIMR_Feb2016_9_06.csv    160    
A/Stockholm/65/2015    A/Netherlands/525/2014    F23/15    NIMR_Feb2016_9_06.csv    80    
A/Stockholm/65/2015    A/Samara/73/2013    F35/15    NIMR_Feb2016_9_06.csv    80    
A/Stockholm/65/2015    A/Stockholm/6/2014    F14/14    NIMR_Feb2016_9_06.csv    640    
A/Stockholm/65/2015    A/Stockholm/6/2014    F20/14    NIMR_Feb2016_9_06.csv    320    
A/Stockholm/65/2015    A/Switzerland/9715293/2013    F18/151    NIMR_Feb2016_9_06.csv    160    
A/Stockholm/65/2015    A/Switzerland/9715293/2013    F32/14    NIMR_Feb2016_9_06.csv    160    

We're missing A/Texas/50/2012 in test_tdb_2.

jstoja commented 4 years ago

Hello @trvrb,

Is it something that is still relevant? Can this be investigated by non-Bedford contributors?

Thanks