Closed trvrb closed 7 years ago
The --all option in download_all.py is much appreciated. However, it needs to be smarter about how hi_strains.tsv files are combined. Here,
--all
download_all.py
hi_strains.tsv
https://github.com/nextstrain/fauna/blob/master/download_all.py#L64
we need to combine the HI strain tsvs in a smarter fashion. Each individual tsv looks like:
A/Pakistan/431/2015 5 A/Mexico/4159/2016 6 A/Kazakhstan/646/2016 5 ... A/Pakistan/431/2015 6
The combined all_hi_strains.tsv needs to have
all_hi_strains.tsv
A/Pakistan/431/2015 11
The titers tsv files can be concatenated just as they are now.
The
--alloption indownload_all.pyis much appreciated. However, it needs to be smarter about howhi_strains.tsvfiles are combined. Here,https://github.com/nextstrain/fauna/blob/master/download_all.py#L64
we need to combine the HI strain tsvs in a smarter fashion. Each individual tsv looks like:
The combined
all_hi_strains.tsvneeds to haveThe titers tsv files can be concatenated just as they are now.