nextstrain / forecasts-ncov

SARS-CoV-2 variant growth rates and frequency forecasts
https://nextstrain.org/sars-cov-2/forecasts/
7 stars 2 forks source link

Refactor case counts workflow #102

Closed joverlee521 closed 4 months ago

joverlee521 commented 4 months ago

Description of proposed changes

Our push to use short-lived AWS credentials has finally pushed me to put this into a proper Snakemake workflow that can be run by nextstrain build.

Related issue(s)

Related to https://github.com/nextstrain/private/issues/110

Checklist