search

nextstrain / forecasts-ncov

SARS-CoV-2 variant growth rates and frequency forecasts
https://nextstrain.org/sars-cov-2/forecasts/
7 stars 2 forks source link

Add recombinant clade definition #69

Closed joverlee521 closed 10 months ago

joverlee521 commented 10 months ago

Adding "recombinant" to clade definition to fix the AssertionError raised by our automated model runs.

Follow up to #67

Checklist

joverlee521 commented 10 months ago

Modify the upstream data categorization so that what's currently "recombinant" is grouped together with "other". This seems the most sensible to me but I am not an expert on the ingest side of things here.

Ah, this was the direction @trvrb was going in https://github.com/nextstrain/forecasts-ncov/pull/45. I can close this PR in favor of grouping "recombinant" into "other".