search

nextstrain / forecasts-ncov

SARS-CoV-2 variant growth rates and frequency forecasts
https://nextstrain.org/sars-cov-2/forecasts/
7 stars 2 forks source link

Revisit sequence data inclusion thresholds #97

Closed joverlee521 closed 3 months ago

joverlee521 commented 4 months ago

Raised by @trvrb in today's forecasting meeting.

Revisit the current config thresholds in prepare_data to be able to include:

  1. 24B (JN.1.11.1) in the Nextstrain clade frequencies plot - addressed in https://github.com/nextstrain/forecasts-ncov/pull/98
  2. More countries across all graphs - addressing in https://github.com/nextstrain/forecasts-ncov/pull/99
joverlee521 commented 4 months ago

For [1], we can use the force_include_clades config param to force include 24B even if it doesn't meet the threshold counts. This will prevent other non-relevant clades from being included in the plot.

joverlee521 commented 3 months ago

Closed by #98 + #99.