Full genomes for Edmonston-related vaccine strains were present in the ingest dataset, but weren't making it to the final genome or N450 results due to getting filtered out from lack of date metadata. This PR surfaces these vaccine strains by:
Including annotations for wild-type Edmonston as well as 5 derived vaccine strains.
Swapping to country year group-by so that samples with just year metadata make it into the final build.
Including strain coloring to provide proper descriptions of these 6 samples.
I've just the entire pipeline locally and everything works as expected.
Full genomes for Edmonston-related vaccine strains were present in the ingest dataset, but weren't making it to the final genome or N450 results due to getting filtered out from lack of
datemetadata. This PR surfaces these vaccine strains by:country yeargroup-by so that samples with just year metadata make it into the final build.straincoloring to provide proper descriptions of these 6 samples.I've just the entire pipeline locally and everything works as expected.
Results from running this branch are viewable at: