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nextstrain / measles

Nextstrain build for measles virus
https://nextstrain.org/measles
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pull data from https instead of fauna #3

Closed j23414 closed 2 years ago

j23414 commented 2 years ago

Description of proposed changes

To match the zika workflow, pull data from https instead of fauna (rethinkdb).

Related issue(s)

Related to pull https://github.com/nextstrain/zika/pull/15

Testing

To test the full pipeline:

cd measles
nextstrain build .

To test the smaller test dataset

cd measles
mkdir -p data
cp -v example_data/* data/.
nextstrain build .
j23414 commented 2 years ago

hmm, I might not have "merge" permissions for nextstrain/measles. Anyone else willing to merge?

victorlin commented 2 years ago

@j23414 I just added @nextstrain/core as a writer to this repo so you should be able to do so now.