Closed corneliusroemer closed 5 days ago
@genehack asked a similar question for yellow fever on Slack, so summarizing discussion here
We already abbreviate authors as part of the ingest curate rule and output as the abbr_authors
column. However, the full authors list is being used in the final Auspice output because augur export v2
is hard-coded to check for the author
or authors
field (ref).
Outside of updating augur export, the best path forward would be to switch authors
to full_authors
and abbr_authors
to authors
. Example in pathogen-repo-guide
Switching sounds good to me.
We should probably unhardcode authors in export though eventually.
We should probably unhardcode authors in export though eventually.
Yes. My memory was that we used "authors" (in metadata TSVs) to represent "Roemer et al" etc, and augur export
was designed around that. We've since switched to encoding the entire author list as "authors" without updating augur export
.
☝️ created issue in augur repo for removing the hard-coded export.
Right now the author name list is very long, causing deteriorated functionality:
We should shorten with e.g. augur curate's functionality for shortening author names.