Add reasonable default for clade_legacy so that new clade doesn't require changes in ingest's `clade-legacy-mapping.yml`

nextstrain / ncov-ingest

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

MIT License

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Add reasonable default for clade_legacy so that new clade doesn't require changes in ingest's `clade-legacy-mapping.yml` #406

Open corneliusroemer opened 1 year ago

corneliusroemer commented 1 year ago

Context

See "Future work" item in https://github.com/nextstrain/ncov-ingest/pull/405

Description

Add a reasonable default for clade_legacy so that new clade doesn't require changes in ingest. E.g., we could use the WHO column, or simply add (Omicron), or add nothing at all, i.e. map to itself.