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nextstrain / ncov-ingest

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
MIT License
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Most RKI sequences lack submission date #410

Open corneliusroemer opened 12 months ago

corneliusroemer commented 12 months ago

Most RKI sequences lack submission date since move to the new format.

I've opened an issue in the RKI repo to let them know that most submission dates have gone missing with the new format: https://github.com/robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland/issues/50

If this doesn't get fixed upstream we can patch the submission dates back using dates from the old format, but let's wait for a bit to save us unnecessary work.

Originally posted by @corneliusroemer in https://github.com/nextstrain/ncov-ingest/issues/409#issuecomment-1630894026

corneliusroemer commented 11 months ago

RKI has said they have fixed the issue. We should check on Wednesday 26th of July, as the changes will take some time to propagate.