nextstrain / ncov-ingest

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
MIT License
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Race condition between diff and uploads to S3 #423

Closed joverlee521 closed 5 months ago

joverlee521 commented 5 months ago

Similar to the race condition noted in https://github.com/nextstrain/mpox/commit/ad3481a479e5b795f9ce0b8f9ecb422256e903d5

This has resulted in the lack of notifications for the additional-info-changes.txt. Without these notifications, we have not been alerted to update the gisaid_geoLocationRules.tsv.

This issue was prompted by @trvrb flagging messy location names for Washington state internally.