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nextstrain / ncov

Nextstrain build for novel coronavirus SARS-CoV-2
https://nextstrain.org/ncov
MIT License
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Dead link in doc #663

Closed alaindebecker closed 3 years ago

alaindebecker commented 3 years ago

The doc page ncov/docs/naming_clades.md has a dead link.

The simple python script on the last but one paragraph points to ncov/blob/master/assign_clades.py which do not exists.

Possible correction: ncov/blob/master/scripts/assign_clades.py, although this script is flaged as obsolete.

varshitakolipaka commented 3 years ago

Hi, there! I believe the documentation points to this python script, however, the script is indeed marked obselete, and instead defaults/clades.tsv has been recommended for use.

eharkins commented 3 years ago

Thanks! I believe the latest version of the relevant script is linked on this page: https://docs.nextstrain.org/projects/ncov/en/latest/reference/naming_clades.html.

The link points to https://github.com/nextstrain/ncov/blob/master/scripts/assign_clades.py. Let me know if this is not what you're looking for. In general, the updated docs and tutorial for this repo are now located at https://docs.nextstrain.org/projects/ncov/en/latest/index.html. Please let us know if you find more broken links there or elsewhere on docs.nextstrain.org!

@rneher do we need to update https://docs.nextstrain.org/projects/ncov/en/latest/reference/naming_clades.html#identifying-nextstrain-clades at all if the above script linked in that section is indeed "obselete"?