nextstrain / nextstrain.org

The Nextstrain website
https://nextstrain.org
GNU Affero General Public License v3.0
87 stars 49 forks source link

Add measles blog post #911

Closed kimandrews closed 2 weeks ago

kimandrews commented 2 weeks ago

Description of proposed changes

This PR adds a blog post about new measles resources.

Related issue(s)

Checklist

genehack commented 2 weeks ago

Preview of the post

genehack commented 2 weeks ago

(probably non-blocking)

I note that the mpox dataset has "Enabled by data from GenBank." but measles does not — do we consistently give attribution like this? (Seems nice.)

trvrb commented 2 weeks ago

Looks good to me. Please merge whenever you'd like.

corneliusroemer commented 2 weeks ago

(probably non-blocking)

I note that the mpox dataset has "Enabled by data from GenBank." but measles does not — do we consistently give attribution like this? (Seems nice.)

Good spot, indeed it's good practice to include provenance in a structured way! This is done in auspice_config.json through a top-level field:

  "data_provenance": [
    {
      "name": "GenBank",
      "url": "https://www.ncbi.nlm.nih.gov/genbank/"
    }
  ],

Ah I see it's already done in https://github.com/nextstrain/measles/pull/39 🎉

https://github.com/nextstrain/mpox/blob/master/phylogenetic%2Fdefaults%2Fhmpxv1_big%2Fauspice_config.json#L6-L11