CI failure: nextclade3 command not found

nextstrain / rsv

Workflow for RSV analyses on Nextstrain.org

https://nextstrain.org/rsv

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Closed jameshadfield closed 11 months ago

jameshadfield commented 11 months ago

Failure observed from Augur PR 1348 while it ran it's pathogen-repo-rsv workflow. Error:

 /home/runner/micromamba/envs/augur/bin/bash: line 2: nextclade3: command not found

(Direct link to the failing CI job)

I haven't investigated more. Tagging @corneliusroemer as I know you're on top of the migration here!

corneliusroemer commented 11 months ago

Expected failure due to lack of Nextclade 3 in conda, not a bug

Docker passes

victorlin commented 11 months ago