Adds optional "--start" and "--end" arguments to provide 0-based start and end positions respective to a "--gene" of interest.
Since the GenBank sequences can contain extra sequences off the end of the polyprotein, the start and end positions are relative to the gene of interest which was deemed more stable behavior.
Example of only pulling out E gene in Dengue (original)
Description of proposed changes
Adds optional "--start" and "--end" arguments to provide 0-based start and end positions respective to a "--gene" of interest.
Since the GenBank sequences can contain extra sequences off the end of the polyprotein, the start and end positions are relative to the gene of interest which was deemed more stable behavior.
Example of only pulling out E gene in Dengue (original)
Will generate a reference genbank with features:
Example of pulling E subgenic region (New Feature)
Run with new start and end region:
Will result in:
Related issue(s)
Checklist