ingest: use new augur curate commands - Githubissues

nextstrain / rsv

Workflow for RSV analyses on Nextstrain.org

https://nextstrain.org/rsv

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ingest: use new augur curate commands #67

Closed joverlee521 closed 4 months ago

joverlee521 commented 4 months ago

Follow up to https://github.com/nextstrain/ingest/issues/43, https://github.com/nextstrain/ingest/issues/44, and blocked on new Augur release.

TODOs

[ ] update transform rule to use new augur curate commands
[ ] update ingest/vendored to remove cruft

Since we're making changes here anyways, consider renaming transform to curate to conform to the pathogen-repo-guide.