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nextstrain
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sacra
Cleaning scripts for real-time pathogen analysis
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Rename `master` to `main`
#24
genehack
opened
5 months ago
1
Bump actions/checkout from 3 to 4
#23
dependabot[bot]
closed
9 months ago
1
Migrate CI to GitHub Actions
#22
victorlin
closed
2 years ago
1
Sacra runs scale very badly on sequence count.
#21
barneypotter24
opened
6 years ago
0
Misc tweaks
#20
tsibley
closed
6 years ago
8
use travis CI
#19
jameshadfield
closed
6 years ago
1
Attribution URL and sequence URL not parsed correctly
#18
trvrb
opened
6 years ago
0
Attributions not being parsed for FASTA input
#17
trvrb
opened
6 years ago
0
Mumps accession parsing throwing an error
#16
trvrb
opened
6 years ago
1
Lassa accession list parsing not working
#15
trvrb
opened
6 years ago
0
Strains and samples are duplicated when they shouldn't be
#14
trvrb
opened
6 years ago
1
Null attributes not parsed correctly
#13
trvrb
opened
6 years ago
1
Document builds
#12
trvrb
opened
6 years ago
6
Quickly add metadata via command line arguments
#11
trvrb
closed
6 years ago
2
Class based
#10
barneypotter24
closed
6 years ago
0
Dynamic
#9
jameshadfield
closed
6 years ago
2
Cleaning functions
#8
barneypotter24
closed
7 years ago
2
Genbank API for reference lookup
#7
jameshadfield
closed
7 years ago
0
Schema
#6
trvrb
closed
6 years ago
9
Pick a JSON spec for Sacra output/flora
#5
barneypotter24
closed
7 years ago
1
Sacra builds should point to current commit.
#4
barneypotter24
opened
7 years ago
0
Dataset merges are being duplicated.
#3
barneypotter24
closed
7 years ago
0
Filter documents that are missing required fields and remove extraneous fields.
#2
barneypotter24
opened
7 years ago
0
Dataset.dataset should be a dict, not a list of dicts.
#1
barneypotter24
closed
6 years ago
1