nextstrain / seasonal-cov

Nextstrain build for seasonal coronaviruses
https://nextstrain.org/seasonal-cov/
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Exclude cell-passaged strains; remove `passage_type` annotations #29

Closed genehack closed 3 months ago

genehack commented 3 months ago

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There are sound reasons to explicitly exclude the KF285 and KF293 strains from the phylogenetic build. If we manually exclude them, we no longer have any need to annotate the passage_type field, which makes it easier to port this repo to the new augur curate commands.