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nextstrain / seasonal-cov

Nextstrain build for seasonal coronaviruses
https://nextstrain.org/seasonal-cov/
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Convert to new `augur curate` commands; update ingest/vendored subrepo [#26] #31

Closed genehack closed 3 months ago

genehack commented 3 months ago

Description of proposed changes

This PR converts legacy ingest/vendored curation steps into augur curate-based ones.

It also updates the ingest/vendored subrepo to the current version.

Related issue(s)

26

Checklist

genehack commented 3 months ago

Left nitpicky nits, but nothing blocking.

:grin: nits picked