Clean up unused rules, config files, and scripts from the previous workflow implementation.
Each commit removes a different set of related files, so if people disagree about any set being removed, we can drop the offending commit. For example, the scripts that I've removed are not currently used, but one could argue that it's valuable to keep the select_strains.py script around as a historical document.
I retained a few scripts that are not currently used by the workflow but that appear to be generally useful for the future including:
Description of proposed changes
Clean up unused rules, config files, and scripts from the previous workflow implementation.
Each commit removes a different set of related files, so if people disagree about any set being removed, we can drop the offending commit. For example, the scripts that I've removed are not currently used, but one could argue that it's valuable to keep the
select_strains.pyscript around as a historical document.I retained a few scripts that are not currently used by the workflow but that appear to be generally useful for the future including:
scripts/generate_locations_file.pyscripts/mutation_statistics.pyTesting