Adds distance maps for epitope sites and average escape scores based on antigenic escape scores from Welsh et al. 2023 [1], adds these maps to the distance maps config, and only exposes these distances through the nextflu-private builds Auspice config JSON for now. Adds the Python notebook used to generate these distance maps from the original raw data, so we can rebuild them later as needed.
Description of proposed changes
Adds distance maps for epitope sites and average escape scores based on antigenic escape scores from Welsh et al. 2023 [1], adds these maps to the distance maps config, and only exposes these distances through the nextflu-private builds Auspice config JSON for now. Adds the Python notebook used to generate these distance maps from the original raw data, so we can rebuild them later as needed.
[1] https://www.biorxiv.org/content/10.1101/2023.12.12.571235v1
Checklist