Add Auspice JSON colorings for HA/NA accessions

nextstrain / seasonal-flu

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

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Add Auspice JSON colorings for HA/NA accessions #138

Closed huddlej closed 10 months ago

huddlej commented 10 months ago

Description of proposed changes

Adds coloring entries for the HA and NA accessions associated with each sequence in a build, so this information appears in the public trees and allows users to determine the sequences that correspond with each strain name.

Related issue(s)

Closes #137

Checklist

[x] Checks pass

j23414 commented 10 months ago

Running a quick test: https://github.com/nextstrain/seasonal-flu/actions/runs/7350669867

huddlej commented 10 months ago

Thanks, @j23414! The implementation as a coloring is not ideal, but hopefully this will be useful for people and we'll eventually setup an augur/auspice interface that doesn't require these to be colorings.