nextstrain.yaml: Update to Nextclade v3

nextstrain / seasonal-flu

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

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Closed joverlee521 closed 7 months ago

joverlee521 commented 7 months ago

Replace nextalign with nextclade the workflow has been updated to use Nextclade V3 in https://github.com/nextstrain/seasonal-flu/pull/145