Adds the field containing GISAID isolate id (values prefixed by "EPIISL") to the list of fields to include in the download from fauna in the "upload" configuration file. When we run the upload workflow with this change, the parsed metadata files on S3 should include the new column without any other changes needed by other workflows that download the data from S3.
This isolate id field is important in that it represents a single viral isolate that has one or more segment accessions for genes like HA, NA, etc.
Description of proposed changes
Adds the field containing GISAID isolate id (values prefixed by "EPIISL") to the list of fields to include in the download from fauna in the "upload" configuration file. When we run the upload workflow with this change, the parsed metadata files on S3 should include the new column without any other changes needed by other workflows that download the data from S3.
This isolate id field is important in that it represents a single viral isolate that has one or more segment accessions for genes like HA, NA, etc.
Checklist