The persephone branch was initially intended to live long enough to update the zika live build. However, after some internal discussion it was recommended to submit all the changes as a PR.
These commits can be broadly outlined as:
Add ingest pipeline (copied from mpox repo)
Use ncbi-datasets to fetch GenBank records
Add the zika data processing steps from fauna (17e3912d4b4918944fbd80722f6a9f4cbcee5e1f)
Move the phylogenetic workflow to its own folder
Add rules for merging USVI data (933470018a0263a4fff296c7e1c095a5f3e4fe56)
Description of proposed changes
The
persephonebranch was initially intended to live long enough to update the zika live build. However, after some internal discussion it was recommended to submit all the changes as a PR.These commits can be broadly outlined as:
Related issue(s)
Checklist