Closed joverlee521 closed 4 months ago
Other options include:
data/metadata.tsv
, data/sequences.fasta
, data/metadata_all.tsv
, and data/sequences_all.fasta
at https://github.com/nextstrain/zika/blob/c710ca181f23444553bceb46cb00ced9db4eece8/phylogenetic/Snakefile#L22 which would bypass creating another directorylocal_data
folder instead where users can spike in any of their own sequences and records
Running the
clean
rule in the phylogenetic workflow removes the USVI data that was added in https://github.com/nextstrain/zika/pull/31So if you run
clean
then try to run the workflow, it results in an error:Possible solution
I think easiest to just move the USVI data to a different directory, e.g.
usvi_data
, so that it does not get removed with the workflow data.