nextstrain / zika

Nextstrain build for Zika virus
https://nextstrain.org/zika
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ingest: support `custom_rules` from config #46

Closed joverlee521 closed 4 months ago

joverlee521 commented 4 months ago

Description of proposed changes

Follows the pathogen-repo-guide to allow users to define custom rules in the config to extend or override the core ingest workflow.

This is needed to support the upcoming ingest tutorials which use this repo as the example.

Related issue(s)

Pre-work for https://github.com/nextstrain/zika/issues/44

Checklist