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nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
https://nf-cmgg.github.io/germline/
MIT License
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Update metro map and add better docs #108

Closed nvnieuwk closed 1 year ago

nvnieuwk commented 1 year ago

Description of feature

Better docs should be written with examples of how to run the pipeline. An overview of the pipeline parameters would also be helpful. Lastly the metro map should be updated to the latest version

nvnieuwk commented 1 year ago

Investigate https://github.com/adobe/jsonschema2md

nvnieuwk commented 1 year ago

https://github.com/CesiumGS/wetzel

nvnieuwk commented 1 year ago

https://snyk.io/advisor/python/json-schema-for-humans#package-footer

nvnieuwk commented 1 year ago

Created the docs with nf-core schema docs --format markdown --output docs/parameters.md --force (this works well in the v2.8 version of the tooling)

nvnieuwk commented 1 year ago

Added in #109