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nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
https://nf-cmgg.github.io/germline/
MIT License
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Convert GVCF to VCF before validating #115

Closed nvnieuwk closed 1 year ago

nvnieuwk commented 1 year ago

Description of the bug

Convert GVCF to VCF before validating to reduce the amount of false results

Command used and terminal output

No response

Relevant files

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System information

No response

nvnieuwk commented 1 year ago

=> move validation after genotyping => Use PED channel logic