Remove the need to supply a CRAM file when a GVCF is supplied

nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

https://nf-cmgg.github.io/germline/

MIT License

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Remove the need to supply a CRAM file when a GVCF is supplied #136

Closed nvnieuwk closed 1 year ago

nvnieuwk commented 1 year ago

Description of feature

Find a way to parallelize on gvcf files instead of defining the region from the CRAM file. This should reduce the disk space usage for re-joint-genotyping runs

nvnieuwk commented 1 year ago

Fixed in #137