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nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
https://nf-cmgg.github.io/germline/
MIT License
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Add VarDict calling #140

Closed nvnieuwk closed 10 months ago

nvnieuwk commented 1 year ago

Description of feature

Add VarDict calling

nvnieuwk commented 1 year ago

Only for single samples => does not create multi-sample VCFs

nvnieuwk commented 10 months ago

Note to self: Make sure some samples can have different arguments for vardict via the samplesheet

nvnieuwk commented 10 months ago

Note to self: optimize for WES use

nvnieuwk commented 10 months ago

Added to dev

nvnieuwk commented 10 months ago

144