nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
https://nf-cmgg.github.io/germline/
MIT License
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Add `vcf_check` as a safety guard #161

Closed nvnieuwk closed 4 months ago

nvnieuwk commented 7 months ago

Description of feature

https://github.com/brentp/hts-nim-tools#vcf-check

nvnieuwk commented 4 months ago

The tool doesn't seem to work right all the time. It's better to keep it out of the pipeline for now