Scattering not working as it's supposed to

nf-cmgg / germline

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

https://nf-cmgg.github.io/germline/

MIT License

7 stars 1 forks source link

Scattering not working as it's supposed to #85

Closed nvnieuwk closed 1 year ago

nvnieuwk commented 1 year ago

Description of the bug

goleft_indexsplit makes more regions than it's supposed to when the reference contains more contigs than the scatter count => possible fix is to return to bed files to determine the regions and merge all alt contigs into one bed file and make bed files per all other regions

Command used and terminal output

No response

Relevant files

No response

System information

No response

nvnieuwk commented 1 year ago

Fixed in v1.1.1