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nf-cmgg / structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://nf-cmgg.github.io/structural/
MIT License
14 stars 3 forks source link

re-add gridss support #39

Open nvnieuwk opened 1 year ago

nvnieuwk commented 1 year ago

Description of feature

consensus sequence can maybe created using this: https://samtools.github.io/bcftools/bcftools.html#consensus

nvnieuwk commented 9 months ago

This pipeline can be used for inspiration on improving the gridss support: https://github.com/umccr/gridss-purple-linx-nf/tree/main