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nf-cmgg / structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://nf-cmgg.github.io/structural/
MIT License
18 stars 3 forks source link

docs-output #76

Closed mvheetve closed 5 months ago

mvheetve commented 5 months ago

Extended the output documentation + made a few changes to modules.config to

  1. prevent double outputs in case --out_callers is used
  2. output unique files names depending on the directory and annotation.
mvheetve commented 5 months ago

I used complete URLs for hyperlinking. I saw you used shortcuts, for example for #multiqc. Where do I declare those, I can convert to shortcuts if you like.