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nf-cmgg / structural

A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
https://nf-cmgg.github.io/structural/
MIT License
18 stars 3 forks source link

--callers all param #84

Closed mvheetve closed 4 months ago

mvheetve commented 5 months ago

Description of feature

It would be lovely if --callers had the all option, instead of having to make a comma separated list of all callers.

matthdsm commented 5 months ago

It would be even better if all callers were ENabled by default and you can disable them through the cli IMO

nvnieuwk commented 5 months ago

The most sensible ones are now the default (which is all but one at the moment).

nvnieuwk commented 4 months ago

Added in #85